BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB002C06LP1|AL424932
(811 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1241 1345 0.0
>3x_Contig1241
Length = 5349
Score = 1345 bits (666), Expect = 0.0
Identities = 750/791 (94%), Gaps = 2/791 (0%)
Strand = Plus / Minus
Query: 1 cacgtttaatcaaataacatcagwgctgaatgagctatatgcgatcactacgtcatctcc 60
||||||||||||||||||| ||| ||||||||||||| |||||| |||||||||||||||
Sbjct: 1012 cacgtttaatcaaataaca-cagagctgaatgagcta-atgcgaacactacgtcatctcc 955
Query: 61 wtcgttaccacgtcgcctatttgagcctcgttccaccagtaacctgcttaaattctcgar 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 atcgttaccacgtcgcctatttgagcctcgttccaccagtaacctgcttaaattctcgaa 895
Query: 121 atatttcacacacacttgctcattgaccaaagtcttcttcacatgagccttgarctgggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 894 atatttcacacacacttgctcattgaccaaagtcttcttcacatgagccttgaactgggt 835
Query: 181 caatatatccagtttcctctcagctgacaaaagctcatcggacaaaccgtccaacccatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 caatatatccagtttcctctcagctgacaaaagctcatcggacaaaccgtccaacccatt 775
Query: 241 aadctcgtcactcatgtraacctgtdtcttctgtttgaggaggrtcacaattgtdttawc 300
|| |||||||||||||| ||||||| |||||||||||| |||| |||||||||| ||| |
Sbjct: 774 aaactcgtcactcatgtaaacctgtatcttctgtttgaagaggatcacaattgtattaac 715
Query: 301 agcaggagararactaggttatwcacttagtagcggtaaraggtagttgatccagtgtga 360
||||||||| | ||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 714 agcaggagaaaaactaggttaaacacttagtagcggtaaaaggtagttgatccagtgtga 655
Query: 361 taatccggtatagatgtgtctwcmatttatgatccagtttgtttaacaatgtgtttccat 420
||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||
Sbjct: 654 taatccggtatagatgtgtctacaatttataatccagtttgtttaacaatgtgtttccat 595
Query: 421 tattgatactttwgagatttctgtkattggtraacaaattgagagccgtgtggtacgctt 480
|||||||||||| ||||||||||| |||||| |||||||||| |||||||||||||||||
Sbjct: 594 tattgatactttagagatttctgttattggtaaacaaattgaaagccgtgtggtacgctt 535
Query: 481 gtttctgagccacttccacaaaagaggaaavacaccacaaatgatggggggggratrtag 540
|||||||||||||||||||||||||||||| ||||||||||||||||| | || |||
Sbjct: 534 gtttctgagccacttccacaaaagaggaaaaacaccacaaatgatgggaagaaaatatag 475
Query: 541 gtcacgtgcgttcacgtgnctcgcgccttacacaatcaaagtccctggcccattgtgttc 600
||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 474 gtcacgtgcattcacgtgactcgcaccttacacaatcaaagtccctggcccattgtgttc 415
Query: 601 gtttgcgttgcttcttcgactttttctttcctttttcttcccttttccatgattacgatt 660
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 414 gtttgccttgcttcttcgactttctctttcctttttcttcccttttccatgattacaatt 355
Query: 661 accgatgcagtgctttttgattttatcatcaactatggtaacgatgatgcatgcaataag 720
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 accgatgcagtgctttttaattttatcatcaactatggtaacgatgatgcatgcaataag 295
Query: 721 ttaggatcagattaagtaaaggtgtctgtctcttttgcttacgttttctgtttcctttga 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ttaggatcagattaagtaaaggtgtctgtctcttttgcttacgttttctgtttcctttga 235
Query: 781 tttktatatat 791
||| |||||||
Sbjct: 234 tttgtatatat 224
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.714 1.33
Gapped
Lambda K H
1.40 0.714 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,948
Number of Sequences: 1807
Number of extensions: 19948
Number of successful extensions: 5859
Number of sequences better than 1.0e-20: 1
length of query: 811
length of database: 10,358,551
effective HSP length: 16
effective length of query: 795
effective length of database: 10,329,639
effective search space: 8212063005
effective search space used: 8212063005
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.3 bits)
S1: 12 (24.7 bits)
S2: 49 (99.5 bits)